Ilastik - the interactive learning and segmentation toolkit
The KNIME Image Processing - Ilastik Integration allows to execute an Ilastik pixel classification project headless within KNIME.
You can install the KNIME Ilastik Integration from the stable community contributions update-site (see /wiki/install-knime-image-processing 2.2 how to activate it).
After installation In KNIME: Go to File -> Preferences -> KNIME -> Ilastik and enter the path of your Ilastik installation executable.
How to set up an Ilastik pixel classification project
See here on how to create an ilastik project for pixel classification.
Please make sure all images used for training the classifier are copied to the project file.
A simple example workflow, including an example ilastik pixel classification project can be found
. An example ilastik pixel classification project file can be found
Please make sure to apply the pixel classification project only on images with the same dimension as the images used to learn the classifier. Otherwise, an ilastik error may occour.
Christian Dietz, University of Konstanz