Overlay RGB
This tutorial workflow shows how you may color your labeling according to some segment features and write it on disk as an RGB Image.
Image Processing Applications
- High Content Screening
- Bouncing Ball
- Yeast Colonies
- Count Chromosomes
- Larva Tracking
- Car Counting
- Trackmate
- Intensity Measurement
Tutorials
Application Tutorials
Gradient Magnitude
Find Seeds
Watershed Segmentation
Simple Hilite
Median vs Average Filter
Calculations on Labelings
Difference of Gaussians
Overlay RGB
Masking
Interactive Segmentation View
Spot Detection
3D Segmentation
Morphological Image Operations
RGB Images
Color Management
Node Tutorials
Image Calculator
Image Reader
- Feature Calculation
- Interactive Labeling Editor
- Group By
- Labeling Filter
- Dimension Selection
- Streaming
- Basic Views
- Interactive Annotator
- Slice Loop
- Image Cropper
- Projector
- Basic Segmentation
- Cell Clump Splitter 2D
- Dont Save
- Table Creation Mode
- Pixel Types
- Convolver
Integrations
KNIME Python Extensions
ImageJ
Tess4J
CellProfiler
- CellProfiler CometAssay
- CellProfiler Human
- CellProfiler Tumor
- CellProfiler Colocalization
- CellProfiler TrackObjects
- CellProfiler Speckles
Masking using Thresholder
Image masking using a global thresholder.
Basic Setup
The Interactive Segmentation View allows you to explore labeled images by highlighting and filtering of individual segments. Furthermore detail information about segments can be inspected using the (Image) Segment Features node and an Interactive Table.
Advanced Setup Part 1
The Interactive Segmentation View allows you to explore labeled images by highlighting and filtering of individual segments. Furthermore detail information about segments can be inspected using the (Image) Segment Features node and an Interactive Table.
Advanced Setup Part 2
The Interactive Segmentation View allows you to explore labeled images by highlighting and filtering of individual segments. Furthermore detail information about segments can be inspected using the (Image) Segment Features node and an Interactive Table.
Spot Detection
This tutorial workflow shows some very basic approaches for spot-detection in images.
3D Segmentation
This is an example workflow that illustrates 3D-Segmenation
Dilate
Dilate grows bright areas. This can e.g. be used to remove black holes from images.
Erode
Erode shrinks bright areas. This can e.g. be used to remove white spots from images.
Example CT Image
Example application of erode and dilate on a CT image