Versatile and Open Analytics for the Life Sciences
Why KNIME for Life Sciences
Work with your specific life science data types easily and in one single environment.
Manage large amounts of data all in one place.
Take advantage of machine learning capabilities in KNIME.
Use life science community nodes such as RDKit, Vernalis, SeqAn, and more.
Draw on expertise from the KNIME Team as well as the community via the KNIME Forum.
Life Sciences on the KNIME Blog
Learn how to use Python code found in Jupyter notebooks in KNIME as well as how to execute KNIME workflows directly from within Python.
User-friendly End-to-End Lab Automation in Action - Learn how KNIME workflows can automatically retrieve and analyze laboratory data.
Variant prioritization - Reproducible Workflow with Domain Expert Interaction. We combine typical bioinformatics command line tools with built-in functionality in KNIME Analytics Platform including shared components, REST Services, and interactive visualizations and make the results available for interactive investigation as Web Application.
FAIR data with KNIME - Use KNIME to transform your data and align it to the FAIR guiding principles.
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KNIME in Action
Examples of KNIME in Action from our community of Life Science users:
Deep Learning: From Mastering the Game of GO to Revolutionizing Microscopy - by Florian Jug (deNBI).
Building a Clinically Significant Rare Disease Data Master: Approach and Workflows - by Sebastien Lefebvre (Alexion Pharmaceuticals).
Using KNIME to Build a Data-Driven Culture (and Workflows!) in a Biopharma Setting - by Kenneth Longo (WAVE Life Sciences).
Workflow Snippets: Sanitizing query SMARTS
This workflow snippet is meant as a sequel to the previous one, where we showed you how to align molecules. There are some cases where the alignment might not have worked for you right away, e.g. when your drawn structure contains aromaticity. Learn in this snippet how to sanitize SMARTS for any kind of queries (or well, to finally align your molecules).
Download Snippet from KNIME Hub More Life Science Snippets
Video: Working with the RDKit in KNIME Analytics Platform
Learn what you can do with KNIME and the RDKit, based on a couple of examples of common cheminformatics use cases. In addition to using the RDKit KNIME nodes, learn how you can use the broader functionality available using Python and Java scripting nodes available in KNIME.
Watch NowVideo: Conformal Prediction
Learn about a set of nodes, developed by our partner Redfield, for performing conformal prediction, which is an algorithm for making predictions at a user-set confidence level. See the nodes in action in a KNIME workflow.
Watch NowVideo: Integrated Deployment in Action: End to End Data Science for Bioactivity Prediction
In this recorded webinar, we will guide you through the complete journey of a data scientist: from training and selecting the best machine learning model for your data to putting your model into production and creating a simple web application.
Watch NowContact Us
For information about KNIME and how it can help you with your life science projects.