2011-08-11 08:23:44,288 DEBUG main WorkflowEditor : Creating WorkflowEditor... 2011-08-11 08:23:44,288 DEBUG main WorkflowEditor : creating editor actions... 2011-08-11 08:23:44,288 DEBUG main WorkflowEditor : Initializing editor UI... 2011-08-11 08:23:44,288 DEBUG main WorkflowEditor : Opening workflow Editor on workflow.knime 2011-08-11 08:23:44,288 DEBUG main WorkflowEditor : Setting input into editor... 2011-08-11 08:23:44,288 DEBUG main WorkflowEditor : Resource File's project: file:/C:/KNIME/knime_2.4.1/workspace/PAINS-Indigo-parallel 2011-08-11 08:23:44,335 DEBUG ModalContext WorkflowManager : Loading workflow from "C:\KNIME\knime_2.4.1\workspace\PAINS-Indigo-parallel" (version "2.3.0" with loader class "WorkflowPersistorVersion200") 2011-08-11 08:23:44,351 DEBUG ModalContext WorkflowManager : Created subworkflow 0:2 2011-08-11 08:23:44,351 DEBUG ModalContext NodeContainer : Workflow Manager 0 has new state: IDLE 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTED 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTED 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: CONFIGURED 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: CONFIGURED 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: CONFIGURED 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: CONFIGURED 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: CONFIGURED 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: CONFIGURED 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: CONFIGURED 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: CONFIGURED 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Created subworkflow 0:2:40 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Created subworkflow 0:2:42 2011-08-11 08:23:45,178 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:5(1) to node 0:2:32(1) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:13(1) to node 0:2:14(1) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:40(3) to node 0:2:42(3) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:29(1) to node 0:2:30(1) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:40(1) to node 0:2:42(1) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42(0) to node 0:2:29(2) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:12(1) to node 0:2:27(1) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:35(1) to node 0:2:34(1) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:34(1) to node 0:2:42(5) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:32(1) to node 0:2:29(1) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:30(1) to node 0:2:31(1) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:17(1) to node 0:2:19(1) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:14(1) to node 0:2:26(1) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:32(1) to node 0:2:40(0) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:40(2) to node 0:2:42(2) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42(0) to node 0:2:11(1) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:19(1) to node 0:2:35(1) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:27(1) to node 0:2:13(1) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:11(1) to node 0:2:12(1) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:40(0) to node 0:2:42(0) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:40(4) to node 0:2:42(4) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:24(1) to node 0:2:5(1) 2011-08-11 08:23:45,178 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:19(1) to node 0:2:12(2) 2011-08-11 08:23:45,194 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:16(1) to node 0:2:17(1) 2011-08-11 08:23:45,194 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:13(1) to node 0:2:28(1) 2011-08-11 08:23:45,194 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:15(1) to node 0:2:16(1) 2011-08-11 08:23:45,209 DEBUG ModalContext NodeContainer : Table Creator 0:2:3 has new state: EXECUTED 2011-08-11 08:23:45,241 WARN ModalContext File Reader : The file 'file:/C:/KNIME/knime_2.4.1/workspace/PAINS-Indigo/File%20Reader%20(%2315)/drop/pains.txt' can't be accessed anymore! 2011-08-11 08:23:45,241 DEBUG ModalContext NodeContainer : File Reader 0:2:15 has new state: EXECUTED 2011-08-11 08:23:45,272 DEBUG ModalContext NodeContainer : SDF Reader (deprecated) 0:2:21 has new state: IDLE 2011-08-11 08:23:45,272 WARN ModalContext SDF Reader (deprecated) : java.net.MalformedURLException: no protocol: 2011-08-11 08:23:45,272 DEBUG ModalContext SDF Reader (deprecated) : java.net.MalformedURLException: no protocol: org.knime.core.node.InvalidSettingsException: java.net.MalformedURLException: no protocol: at org.knime.chem.base.node.io.sdf.SDFReader2NodeModel.configure(SDFReader2NodeModel.java:139) at org.knime.core.node.NodeModel.configure(NodeModel.java:1022) at org.knime.core.node.NodeModel.configureModel(NodeModel.java:972) at org.knime.core.node.Node.configure(Node.java:1466) at org.knime.core.node.workflow.SingleNodeContainer.nodeConfigure(SingleNodeContainer.java:442) at org.knime.core.node.workflow.SingleNodeContainer.configure(SingleNodeContainer.java:363) at org.knime.core.node.workflow.WorkflowManager.configureSingleNodeContainer(WorkflowManager.java:4259) at org.knime.core.node.workflow.WorkflowManager.postLoad(WorkflowManager.java:5713) at org.knime.core.node.workflow.WorkflowManager.loadContent(WorkflowManager.java:5560) at org.knime.core.node.workflow.WorkflowManager.postLoad(WorkflowManager.java:5672) at org.knime.core.node.workflow.WorkflowManager.loadContent(WorkflowManager.java:5560) at org.knime.core.node.workflow.WorkflowManager.load(WorkflowManager.java:5461) at org.knime.core.node.workflow.WorkflowManager.load(WorkflowManager.java:5405) at org.knime.core.node.workflow.WorkflowManager.loadProject(WorkflowManager.java:5199) at org.knime.workbench.editor2.LoadWorkflowRunnable.run(LoadWorkflowRunnable.java:162) at org.eclipse.jface.operation.ModalContext$ModalContextThread.run(ModalContext.java:121) Caused by: java.net.MalformedURLException: no protocol: at java.net.URL.(Unknown Source) at java.net.URL.(Unknown Source) at java.net.URL.(Unknown Source) at org.knime.chem.base.node.io.sdf.SDFReader2NodeModel.getUrl(SDFReader2NodeModel.java:422) at org.knime.chem.base.node.io.sdf.SDFReader2NodeModel.configure(SDFReader2NodeModel.java:136) ... 15 more 2011-08-11 08:23:45,272 DEBUG ModalContext NodeContainer : SDF Reader (deprecated) 0:2:21 has new state: IDLE 2011-08-11 08:23:45,303 WARN ModalContext File Reader : The file 'file:/C:/KNIME/knime_2.4.1/workspace/PAINS-Indigo/File%20Reader%20(%2324)/drop/WEHI_random_10K.sml' can't be accessed anymore! 2011-08-11 08:23:45,319 DEBUG ModalContext NodeContainer : File Reader 0:2:24 has new state: EXECUTED 2011-08-11 08:23:45,334 INFO ModalContext DatabaseConnectionSettings : Database login timeout: 15 sec. 2011-08-11 08:23:45,334 DEBUG ModalContext NodeContainer : Database Reader 0:2:25 has new state: IDLE 2011-08-11 08:23:45,334 WARN ModalContext Database Reader : java.sql.SQLException: org.knime.core.node.InvalidSettingsException: Driver "oracle.jdbc.driver.OracleDriver" does not accept URL: jdbc:odbc: 2011-08-11 08:23:45,334 DEBUG ModalContext Database Reader : java.sql.SQLException: org.knime.core.node.InvalidSettingsException: Driver "oracle.jdbc.driver.OracleDriver" does not accept URL: jdbc:odbc: org.knime.core.node.InvalidSettingsException: java.sql.SQLException: org.knime.core.node.InvalidSettingsException: Driver "oracle.jdbc.driver.OracleDriver" does not accept URL: jdbc:odbc: at org.knime.base.node.io.database.DBReaderNodeModel.configure(DBReaderNodeModel.java:231) at org.knime.core.node.NodeModel.configure(NodeModel.java:1022) at org.knime.core.node.NodeModel.configureModel(NodeModel.java:972) at org.knime.core.node.Node.configure(Node.java:1466) at org.knime.core.node.workflow.SingleNodeContainer.nodeConfigure(SingleNodeContainer.java:442) at org.knime.core.node.workflow.SingleNodeContainer.configure(SingleNodeContainer.java:363) at org.knime.core.node.workflow.WorkflowManager.configureSingleNodeContainer(WorkflowManager.java:4259) at org.knime.core.node.workflow.WorkflowManager.postLoad(WorkflowManager.java:5713) at org.knime.core.node.workflow.WorkflowManager.loadContent(WorkflowManager.java:5560) at org.knime.core.node.workflow.WorkflowManager.postLoad(WorkflowManager.java:5672) at org.knime.core.node.workflow.WorkflowManager.loadContent(WorkflowManager.java:5560) at org.knime.core.node.workflow.WorkflowManager.load(WorkflowManager.java:5461) at org.knime.core.node.workflow.WorkflowManager.load(WorkflowManager.java:5405) at org.knime.core.node.workflow.WorkflowManager.loadProject(WorkflowManager.java:5199) at org.knime.workbench.editor2.LoadWorkflowRunnable.run(LoadWorkflowRunnable.java:162) at org.eclipse.jface.operation.ModalContext$ModalContextThread.run(ModalContext.java:121) Caused by: java.sql.SQLException: org.knime.core.node.InvalidSettingsException: Driver "oracle.jdbc.driver.OracleDriver" does not accept URL: jdbc:odbc: at org.knime.core.node.port.database.DatabaseReaderConnection.getDataTableSpec(DatabaseReaderConnection.java:203) at org.knime.base.node.io.database.DBReaderNodeModel.configure(DBReaderNodeModel.java:224) ... 15 more Caused by: org.knime.core.node.InvalidSettingsException: Driver "oracle.jdbc.driver.OracleDriver" does not accept URL: jdbc:odbc: at org.knime.core.node.port.database.DatabaseConnectionSettings.createConnection(DatabaseConnectionSettings.java:291) at org.knime.core.node.port.database.DatabaseReaderConnection.getDataTableSpec(DatabaseReaderConnection.java:191) ... 16 more 2011-08-11 08:23:45,334 DEBUG ModalContext NodeContainer : Database Reader 0:2:25 has new state: IDLE 2011-08-11 08:23:45,334 DEBUG ModalContext NodeContainer : String Replacer 0:2:16 has new state: EXECUTED 2011-08-11 08:23:45,381 DEBUG ModalContext DataType : SmilesValue is the preferred value class of cell implementation SmilesCell, made sanity check 2011-08-11 08:23:45,381 DEBUG ModalContext NodeContainer : Molecule Type Cast 0:2:5 has new state: EXECUTED 2011-08-11 08:23:45,412 DEBUG ModalContext NodeContainer : String Replacer 0:2:17 has new state: EXECUTED 2011-08-11 08:23:45,428 DEBUG ModalContext DataType : Class "IndigoMolCell" doesn't have a default value class (it does not implement a static method "getPreferredValueClass()"). Returning null 2011-08-11 08:23:45,444 DEBUG ModalContext NodeContainer : Molecule to Indigo 0:2:32 has new state: EXECUTED 2011-08-11 08:23:45,475 DEBUG ModalContext NodeContainer : Column Resorter 0:2:19 has new state: EXECUTED 2011-08-11 08:23:45,537 DEBUG ModalContext NodeContainer : Parallelise input 0:2:40 has new state: EXECUTED 2011-08-11 08:23:45,537 DEBUG ModalContext NodeContainer : Parallelise input 0:2:40 has new state: EXECUTED 2011-08-11 08:23:45,537 DEBUG ModalContext NodeContainer : Parallelise input 0:2:40 has new state: EXECUTED 2011-08-11 08:23:45,537 DEBUG ModalContext NodeContainer : Parallelise input 0:2:40 has new state: EXECUTED 2011-08-11 08:23:45,537 DEBUG ModalContext NodeContainer : Parallelise input 0:2:40 has new state: EXECUTED 2011-08-11 08:23:45,537 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:40:46(1) to node 0:2:40(2) 2011-08-11 08:23:45,537 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:40:47(1) to node 0:2:40(3) 2011-08-11 08:23:45,537 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:40:45(1) to node 0:2:40(1) 2011-08-11 08:23:45,537 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:40:44(1) to node 0:2:40(0) 2011-08-11 08:23:45,537 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:40(0) to node 0:2:40:47(1) 2011-08-11 08:23:45,537 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:40(0) to node 0:2:40:48(1) 2011-08-11 08:23:45,537 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:40(0) to node 0:2:40:45(1) 2011-08-11 08:23:45,537 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:40(0) to node 0:2:40:46(1) 2011-08-11 08:23:45,537 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:40:48(1) to node 0:2:40(4) 2011-08-11 08:23:45,537 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:40(0) to node 0:2:40:44(1) 2011-08-11 08:23:45,569 DEBUG ModalContext NodeContainer : Java Snippet Row Filter 0:2:40:44 has new state: EXECUTED 2011-08-11 08:23:45,569 DEBUG ModalContext NodeContainer : Java Snippet Row Filter 0:2:40:45 has new state: EXECUTED 2011-08-11 08:23:45,600 DEBUG ModalContext NodeContainer : Java Snippet Row Filter 0:2:40:46 has new state: EXECUTED 2011-08-11 08:23:45,615 DEBUG ModalContext NodeContainer : Java Snippet Row Filter 0:2:40:47 has new state: EXECUTED 2011-08-11 08:23:45,631 DEBUG ModalContext NodeContainer : Java Snippet Row Filter 0:2:40:48 has new state: EXECUTED 2011-08-11 08:23:45,631 DEBUG ModalContext NodeContainer : Parallelise input 0:2:40 has new state: EXECUTED 2011-08-11 08:23:45,647 DEBUG ModalContext DataType : SmartsValue is the preferred value class of cell implementation SmartsCell, made sanity check 2011-08-11 08:23:45,647 DEBUG ModalContext NodeContainer : Molecule Type Cast 0:2:35 has new state: EXECUTED 2011-08-11 08:23:45,678 DEBUG ModalContext DataType : Class "IndigoQueryMolCell" doesn't have a default value class (it does not implement a static method "getPreferredValueClass()"). Returning null 2011-08-11 08:23:45,678 DEBUG ModalContext NodeContainer : Query Molecule to Indigo 0:2:34 has new state: EXECUTED 2011-08-11 08:23:45,787 DEBUG ModalContext NodeContainer : Substructure match loops 0:2:42 has new state: IDLE 2011-08-11 08:23:45,787 DEBUG ModalContext NodeContainer : Substructure match loops 0:2:42 has new state: IDLE 2011-08-11 08:23:45,787 DEBUG ModalContext NodeContainer : Substructure match loops 0:2:42 has new state: IDLE 2011-08-11 08:23:45,787 DEBUG ModalContext NodeContainer : Substructure match loops 0:2:42 has new state: IDLE 2011-08-11 08:23:45,787 DEBUG ModalContext NodeContainer : Substructure match loops 0:2:42 has new state: IDLE 2011-08-11 08:23:45,787 DEBUG ModalContext NodeContainer : Substructure match loops 0:2:42 has new state: IDLE 2011-08-11 08:23:45,787 DEBUG ModalContext NodeContainer : Substructure match loops 0:2:42 has new state: IDLE 2011-08-11 08:23:45,787 DEBUG ModalContext NodeContainer : Substructure match loops 0:2:42 has new state: IDLE 2011-08-11 08:23:45,787 DEBUG ModalContext NodeContainer : Substructure match loops 0:2:42 has new state: IDLE 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42:7(1) to node 0:2:42:33(2) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42:7(1) to node 0:2:42:35(2) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42:44(1) to node 0:2:42:47(2) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42(0) to node 0:2:42:33(1) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42:7(1) to node 0:2:42:41(2) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42:33(1) to node 0:2:42:46(1) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42:38(1) to node 0:2:42:46(3) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42:45(1) to node 0:2:42(0) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42(2) to node 0:2:42:38(1) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42:47(1) to node 0:2:42:45(1) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42:41(1) to node 0:2:42:46(4) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42(1) to node 0:2:42:35(1) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42:46(1) to node 0:2:42:47(1) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42:7(1) to node 0:2:42:38(2) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42:35(1) to node 0:2:42:46(2) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42(3) to node 0:2:42:41(1) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42:7(1) to node 0:2:42:44(2) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42(4) to node 0:2:42:44(1) 2011-08-11 08:23:45,787 DEBUG ModalContext WorkflowManager : Added new connection from node 0:2:42(5) to node 0:2:42:7(1) 2011-08-11 08:23:45,803 DEBUG ModalContext NodeContainer : Chunk Loop Start 0:2:42:7 has new state: CONFIGURED 2011-08-11 08:23:45,803 DEBUG ModalContext Chunk Loop Start : Configure succeeded. (Chunk Loop Start) 2011-08-11 08:23:45,803 DEBUG ModalContext NodeContainer : Chunk Loop Start 0:2:42:7 has new state: CONFIGURED 2011-08-11 08:23:45,818 DEBUG ModalContext NodeContainer : Substructure Matcher 0:2:42:44 has new state: CONFIGURED 2011-08-11 08:23:45,818 DEBUG ModalContext Substructure Matcher : Configure succeeded. (Substructure Matcher) 2011-08-11 08:23:45,818 DEBUG ModalContext NodeContainer : Substructure Matcher 0:2:42:44 has new state: CONFIGURED 2011-08-11 08:23:45,818 DEBUG ModalContext NodeContainer : Substructure Matcher 0:2:42:41 has new state: CONFIGURED 2011-08-11 08:23:45,818 DEBUG ModalContext Substructure Matcher : Configure succeeded. (Substructure Matcher) 2011-08-11 08:23:45,818 DEBUG ModalContext NodeContainer : Substructure Matcher 0:2:42:41 has new state: CONFIGURED 2011-08-11 08:23:45,818 DEBUG ModalContext NodeContainer : Substructure Matcher 0:2:42:35 has new state: CONFIGURED 2011-08-11 08:23:45,818 DEBUG ModalContext Substructure Matcher : Configure succeeded. (Substructure Matcher) 2011-08-11 08:23:45,818 DEBUG ModalContext NodeContainer : Substructure Matcher 0:2:42:35 has new state: CONFIGURED 2011-08-11 08:23:45,834 DEBUG ModalContext NodeContainer : Substructure Matcher 0:2:42:33 has new state: CONFIGURED 2011-08-11 08:23:45,834 DEBUG ModalContext Substructure Matcher : Configure succeeded. (Substructure Matcher) 2011-08-11 08:23:45,834 DEBUG ModalContext NodeContainer : Substructure Matcher 0:2:42:33 has new state: CONFIGURED 2011-08-11 08:23:45,834 DEBUG ModalContext NodeContainer : Substructure Matcher 0:2:42:38 has new state: CONFIGURED 2011-08-11 08:23:45,834 DEBUG ModalContext Substructure Matcher : Configure succeeded. (Substructure Matcher) 2011-08-11 08:23:45,834 DEBUG ModalContext NodeContainer : Substructure Matcher 0:2:42:38 has new state: CONFIGURED 2011-08-11 08:23:45,849 DEBUG ModalContext NodeContainer : Concatenate (Optional in) 0:2:42:46 has new state: CONFIGURED 2011-08-11 08:23:45,849 DEBUG ModalContext Concatenate (Optional in) : Configure succeeded. (Concatenate (Optional in)) 2011-08-11 08:23:45,849 DEBUG ModalContext NodeContainer : Concatenate (Optional in) 0:2:42:46 has new state: CONFIGURED 2011-08-11 08:23:45,849 DEBUG ModalContext NodeContainer : Concatenate 0:2:42:47 has new state: CONFIGURED 2011-08-11 08:23:45,849 DEBUG ModalContext Concatenate : Configure succeeded. (Concatenate) 2011-08-11 08:23:45,865 DEBUG ModalContext NodeContainer : Concatenate 0:2:42:47 has new state: CONFIGURED 2011-08-11 08:23:45,865 DEBUG ModalContext NodeContainer : Loop End 0:2:42:45 has new state: CONFIGURED 2011-08-11 08:23:45,865 DEBUG ModalContext Loop End : Configure succeeded. (Loop End) 2011-08-11 08:23:45,865 DEBUG ModalContext NodeContainer : Loop End 0:2:42:45 has new state: CONFIGURED 2011-08-11 08:23:45,865 DEBUG ModalContext NodeContainer : Substructure match loops 0:2:42 has new state: CONFIGURED 2011-08-11 08:23:45,881 DEBUG ModalContext NodeContainer : JPython Function 0:2:11 has new state: CONFIGURED 2011-08-11 08:23:45,881 DEBUG ModalContext JPython Function : Configure succeeded. (JPython Function) 2011-08-11 08:23:45,881 DEBUG ModalContext NodeContainer : JPython Function 0:2:11 has new state: CONFIGURED 2011-08-11 08:23:45,881 DEBUG ModalContext NodeContainer : Reference Row Filter 0:2:29 has new state: CONFIGURED 2011-08-11 08:23:45,881 DEBUG ModalContext Reference Row Filter : Configure succeeded. (Reference Row Filter) 2011-08-11 08:23:45,881 DEBUG ModalContext NodeContainer : Reference Row Filter 0:2:29 has new state: CONFIGURED 2011-08-11 08:23:45,912 DEBUG ModalContext NodeContainer : Joiner 0:2:12 has new state: CONFIGURED 2011-08-11 08:23:45,912 DEBUG ModalContext Joiner : Configure succeeded. (Joiner) 2011-08-11 08:23:45,912 DEBUG ModalContext NodeContainer : Joiner 0:2:12 has new state: CONFIGURED 2011-08-11 08:23:45,928 DEBUG ModalContext NodeContainer : Column Filter 0:2:30 has new state: CONFIGURED 2011-08-11 08:23:45,928 DEBUG ModalContext Column Filter : Configure succeeded. (Column Filter) 2011-08-11 08:23:45,928 DEBUG ModalContext NodeContainer : Column Filter 0:2:30 has new state: CONFIGURED 2011-08-11 08:23:45,974 DEBUG ModalContext DataType : DateAndTimeValue is the preferred value class of cell implementation DateAndTimeCell, made sanity check 2011-08-11 08:23:45,974 DEBUG ModalContext DataType : LongValue is the preferred value class of cell implementation LongCell, made sanity check 2011-08-11 08:23:45,990 DEBUG ModalContext NodeContainer : GroupBy 0:2:27 has new state: CONFIGURED 2011-08-11 08:23:45,990 DEBUG ModalContext DataType : Class "DataCell" doesn't have a default value class (it does not implement a static method "getPreferredValueClass()"). Returning null 2011-08-11 08:23:45,990 DEBUG ModalContext GroupBy : Configure succeeded. (GroupBy) 2011-08-11 08:23:45,990 DEBUG ModalContext NodeContainer : GroupBy 0:2:27 has new state: CONFIGURED 2011-08-11 08:23:46,006 DEBUG ModalContext NodeContainer : CSV Writer 0:2:31 has new state: CONFIGURED 2011-08-11 08:23:46,006 WARN ModalContext CSV Writer : Selected output file exists and will be overwritten! 2011-08-11 08:23:46,006 DEBUG ModalContext CSV Writer : Configure succeeded. (CSV Writer) 2011-08-11 08:23:46,006 DEBUG ModalContext NodeContainer : CSV Writer 0:2:31 has new state: CONFIGURED 2011-08-11 08:23:46,021 DEBUG ModalContext NodeContainer : Rename 0:2:13 has new state: CONFIGURED 2011-08-11 08:23:46,021 DEBUG ModalContext DataType : DataValue is the preferred value class of cell implementation MissingCell, made sanity check 2011-08-11 08:23:46,021 DEBUG ModalContext Rename : Configure succeeded. (Rename) 2011-08-11 08:23:46,021 DEBUG ModalContext NodeContainer : Rename 0:2:13 has new state: CONFIGURED 2011-08-11 08:23:46,021 DEBUG ModalContext NodeContainer : Interactive Table 0:2:28 has new state: CONFIGURED 2011-08-11 08:23:46,021 DEBUG ModalContext Interactive Table : Configure succeeded. (Interactive Table) 2011-08-11 08:23:46,021 DEBUG ModalContext NodeContainer : Interactive Table 0:2:28 has new state: CONFIGURED 2011-08-11 08:23:46,021 DEBUG ModalContext NodeContainer : Column Filter 0:2:14 has new state: CONFIGURED 2011-08-11 08:23:46,021 DEBUG ModalContext Column Filter : Configure succeeded. (Column Filter) 2011-08-11 08:23:46,021 DEBUG ModalContext NodeContainer : Column Filter 0:2:14 has new state: CONFIGURED 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : CSV Writer 0:2:26 has new state: CONFIGURED 2011-08-11 08:23:46,037 WARN ModalContext CSV Writer : Selected output file exists and will be overwritten! 2011-08-11 08:23:46,037 DEBUG ModalContext CSV Writer : Configure succeeded. (CSV Writer) 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : CSV Writer 0:2:26 has new state: CONFIGURED 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Parallelise input 0:2:40 has new state: EXECUTED 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Substructure match loops 0:2:42 has new state: CONFIGURED 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : DrugBank 0:0 has new state: EXECUTED 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Simple Preprocessing 0:1:0 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Extended NER Preprocessing 0:1:1 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Frequencies 0:1:2 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Vector Creation 0:1:3 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Cross Validation 0:1:4 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Variables Loop (Data) 0:1:5 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Variables Loop (Database) 0:1:6 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Feature Elimination 0:1:7 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Iterate List of Files 0:1:8 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Loop x-times 0:1:9 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Boosting Learner 0:1:10 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Boosting Predictor 0:1:11 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Delegating 0:1:12 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Bagging 0:1:13 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : KNIME MetaNode Repository 0:1 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Parallelise input 0:2:40 has new state: EXECUTED 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Substructure match loops 0:2:42 has new state: CONFIGURED 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext NodeContainer : Workflow Manager 0 has new state: IDLE 2011-08-11 08:23:46,037 DEBUG ModalContext WorkflowManager : Loaded workflow from "C:\KNIME\knime_2.4.1\workspace\PAINS-Indigo-parallel" with no errors 2011-08-11 08:23:46,052 DEBUG main ProjectWorkflowMap : Adding "file:/C:/KNIME/knime_2.4.1/workspace/PAINS-Indigo-parallel" to project map (2 in total) 2011-08-11 08:23:46,068 DEBUG main KnimeResourceNavigator : ROOT's workflow has changed NODE_ADDED 2011-08-11 08:23:46,068 DEBUG main KnimeResourceNavigator : Workflow PAINS-Indigo-parallel 0:2 added 2011-08-11 08:23:46,068 DEBUG main ProjectWorkflowMap : registering org.knime.workbench.editor2.WorkflowEditor@756d0c to file:/C:/KNIME/knime_2.4.1/workspace/PAINS-Indigo-parallel. 1 registered clients now. 2011-08-11 08:23:46,084 DEBUG main WorkflowRootEditPart : part: AnnotationEditPart( Top half: various ways to input structures ) 2011-08-11 08:23:46,099 DEBUG main WorkflowRootEditPart : part: AnnotationEditPart( Bottom half: input of PAINS query strings ) 2011-08-11 08:23:46,099 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( Table Creator 0:2:3 (EXECUTED) ) 2011-08-11 08:23:46,099 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( Molecule Type Cast 0:2:5 (EXECUTED) ) 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:24(1) -> 0:2:5( 1)] 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:5(1) -> 0:2:32( 1)] 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,099 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( JPython Function 0:2:11 (CONFIGURED) ) 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:42(0) -> 0:2:11( 1)] 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:11(1) -> 0:2:12( 1)] 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : modelling info: bendpoints: 809, 422, 434, 422, 2011-08-11 08:23:46,099 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( Joiner 0:2:12 (CONFIGURED) ) 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:11(1) -> 0:2:12( 1)] 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : modelling info: bendpoints: 809, 422, 434, 422, 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:19(1) -> 0:2:12( 2)] 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:12(1) -> 0:2:27( 1)] 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,099 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( Rename 0:2:13 (CONFIGURED) ) 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:27(1) -> 0:2:13( 1)] 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:13(1) -> 0:2:28( 1)] 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:13(1) -> 0:2:14( 1)] 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,099 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( Column Filter 0:2:14 (CONFIGURED) ) 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:13(1) -> 0:2:14( 1)] 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:14(1) -> 0:2:26( 1)] 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,099 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( File Reader 0:2:15 (EXECUTED) ) 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:15(1) -> 0:2:16( 1)] 2011-08-11 08:23:46,099 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,099 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( String Replacer 0:2:16 (EXECUTED) ) 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:15(1) -> 0:2:16( 1)] 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:16(1) -> 0:2:17( 1)] 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,115 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( String Replacer 0:2:17 (EXECUTED) ) 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:16(1) -> 0:2:17( 1)] 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:17(1) -> 0:2:19( 1)] 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,115 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( Column Resorter 0:2:19 (EXECUTED) ) 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:17(1) -> 0:2:19( 1)] 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:19(1) -> 0:2:12( 2)] 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:19(1) -> 0:2:35( 1)] 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,115 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( SDF Reader (deprecated) 0:2:21 (IDLE) ) 2011-08-11 08:23:46,115 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( File Reader 0:2:24 (EXECUTED) ) 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:24(1) -> 0:2:5( 1)] 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,115 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( Database Reader 0:2:25 (IDLE) ) 2011-08-11 08:23:46,115 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( CSV Writer 0:2:26 (CONFIGURED) ) 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:14(1) -> 0:2:26( 1)] 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,115 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( GroupBy 0:2:27 (CONFIGURED) ) 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:12(1) -> 0:2:27( 1)] 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:27(1) -> 0:2:13( 1)] 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,115 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( Interactive Table 0:2:28 (CONFIGURED) ) 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:13(1) -> 0:2:28( 1)] 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,115 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( Reference Row Filter 0:2:29 (CONFIGURED) ) 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:32(1) -> 0:2:29( 1)] 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:42(0) -> 0:2:29( 2)] 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:29(1) -> 0:2:30( 1)] 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,115 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( Column Filter 0:2:30 (CONFIGURED) ) 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:29(1) -> 0:2:30( 1)] 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:30(1) -> 0:2:31( 1)] 2011-08-11 08:23:46,115 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,115 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( CSV Writer 0:2:31 (CONFIGURED) ) 2011-08-11 08:23:46,130 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:30(1) -> 0:2:31( 1)] 2011-08-11 08:23:46,130 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,130 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( Molecule to Indigo 0:2:32 (EXECUTED) ) 2011-08-11 08:23:46,130 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:5(1) -> 0:2:32( 1)] 2011-08-11 08:23:46,130 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,130 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:32(1) -> 0:2:29( 1)] 2011-08-11 08:23:46,130 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,130 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:32(1) -> 0:2:40( 0)] 2011-08-11 08:23:46,130 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,130 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( Query Molecule to Indigo 0:2:34 (EXECUTED) ) 2011-08-11 08:23:46,130 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:35(1) -> 0:2:34( 1)] 2011-08-11 08:23:46,130 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,130 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:34(1) -> 0:2:42( 5)] 2011-08-11 08:23:46,130 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,130 DEBUG main WorkflowRootEditPart : part: NodeContainerEditPart( Molecule Type Cast 0:2:35 (EXECUTED) ) 2011-08-11 08:23:46,130 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:19(1) -> 0:2:35( 1)] 2011-08-11 08:23:46,130 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,130 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:35(1) -> 0:2:34( 1)] 2011-08-11 08:23:46,130 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,130 DEBUG main WorkflowRootEditPart : part: SubworkflowEditPart( (WFM) Parallelise input 0:2:40 (EXECUTED) ) 2011-08-11 08:23:46,193 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:32(1) -> 0:2:40( 0)] 2011-08-11 08:23:46,193 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,193 DEBUG main MetaNodeOutPortEditPart : created sub workflow out port edit part with type PortType(DataTableSpec,BufferedDataTable) and index 0 2011-08-11 08:23:46,209 DEBUG main MetaNodeOutPortEditPart : returning new sub meta node out port figure with type PortType(DataTableSpec,BufferedDataTable) index 0 nr outports 5 and tooltip Connected to: True match 2011-08-11 08:23:46,209 DEBUG main MetaNodeOutPortEditPart : model: org.knime.core.node.workflow.NodeContainerOutPort@1030dea state: EXECUTED 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:40(0) -> 0:2:42( 0)] 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,240 DEBUG main MetaNodeOutPortEditPart : created sub workflow out port edit part with type PortType(DataTableSpec,BufferedDataTable) and index 1 2011-08-11 08:23:46,240 DEBUG main MetaNodeOutPortEditPart : returning new sub meta node out port figure with type PortType(DataTableSpec,BufferedDataTable) index 1 nr outports 5 and tooltip Connected to: True match 2011-08-11 08:23:46,240 DEBUG main MetaNodeOutPortEditPart : model: org.knime.core.node.workflow.NodeContainerOutPort@15997e4 state: EXECUTED 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:40(1) -> 0:2:42( 1)] 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,240 DEBUG main MetaNodeOutPortEditPart : created sub workflow out port edit part with type PortType(DataTableSpec,BufferedDataTable) and index 2 2011-08-11 08:23:46,240 DEBUG main MetaNodeOutPortEditPart : returning new sub meta node out port figure with type PortType(DataTableSpec,BufferedDataTable) index 2 nr outports 5 and tooltip Connected to: True match 2011-08-11 08:23:46,240 DEBUG main MetaNodeOutPortEditPart : model: org.knime.core.node.workflow.NodeContainerOutPort@8ee504 state: EXECUTED 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:40(2) -> 0:2:42( 2)] 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,240 DEBUG main MetaNodeOutPortEditPart : created sub workflow out port edit part with type PortType(DataTableSpec,BufferedDataTable) and index 3 2011-08-11 08:23:46,240 DEBUG main MetaNodeOutPortEditPart : returning new sub meta node out port figure with type PortType(DataTableSpec,BufferedDataTable) index 3 nr outports 5 and tooltip Connected to: True match 2011-08-11 08:23:46,240 DEBUG main MetaNodeOutPortEditPart : model: org.knime.core.node.workflow.NodeContainerOutPort@15d7f70 state: EXECUTED 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:40(3) -> 0:2:42( 3)] 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,240 DEBUG main MetaNodeOutPortEditPart : created sub workflow out port edit part with type PortType(DataTableSpec,BufferedDataTable) and index 4 2011-08-11 08:23:46,240 DEBUG main MetaNodeOutPortEditPart : returning new sub meta node out port figure with type PortType(DataTableSpec,BufferedDataTable) index 4 nr outports 5 and tooltip Connected to: True match 2011-08-11 08:23:46,240 DEBUG main MetaNodeOutPortEditPart : model: org.knime.core.node.workflow.NodeContainerOutPort@186b489 state: EXECUTED 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:40(4) -> 0:2:42( 4)] 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,240 DEBUG main WorkflowRootEditPart : part: SubworkflowEditPart( (WFM) Substructure match loops 0:2:42 (CONFIGURED) ) 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:40(0) -> 0:2:42( 0)] 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:40(1) -> 0:2:42( 1)] 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:40(2) -> 0:2:42( 2)] 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:40(3) -> 0:2:42( 3)] 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:40(4) -> 0:2:42( 4)] 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:34(1) -> 0:2:42( 5)] 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,240 DEBUG main MetaNodeOutPortEditPart : created sub workflow out port edit part with type PortType(DataTableSpec,BufferedDataTable) and index 0 2011-08-11 08:23:46,240 DEBUG main MetaNodeOutPortEditPart : returning new sub meta node out port figure with type PortType(DataTableSpec,BufferedDataTable) index 0 nr outports 1 and tooltip Connected to: Collected results 2011-08-11 08:23:46,240 DEBUG main MetaNodeOutPortEditPart : model: org.knime.core.node.workflow.NodeContainerOutPort@13685ac state: CONFIGURED 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:42(0) -> 0:2:11( 1)] 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : refreshing visuals for: STD[0:2:42(0) -> 0:2:29( 2)] 2011-08-11 08:23:46,240 DEBUG main ConnectionContainerEditPart : modelling info: null 2011-08-11 08:23:46,411 INFO main jetty : 2011-08-11 08:23:46.411:INFO:org.knime.workbench.help.jetty:Logging to org.knime.workbench.help.jetty via org.knime.workbench.helpview.JettyLogger 2011-08-11 08:23:46,474 INFO main jetty : 2011-08-11 08:23:46.474:INFO:org.knime.workbench.help.jetty:jetty-6.1.x 2011-08-11 08:23:46,521 INFO main jetty : 2011-08-11 08:23:46.521:INFO:org.knime.workbench.help.jetty:Started SelectChannelConnector@10.43.0.39:51176 2011-08-11 08:23:50,579 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:50,579 DEBUG main NodeContainer : Setting dirty flag on Chunk Loop Start 0:2:42:7 2011-08-11 08:23:50,579 DEBUG main NodeContainer : Setting dirty flag on Substructure match loops 0:2:42 2011-08-11 08:23:50,579 DEBUG main NodeContainer : Setting dirty flag on PAINS-Indigo-parallel 0:2 2011-08-11 08:23:50,579 DEBUG main NodeContainer : Chunk Loop Start 0:2:42:7 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,579 DEBUG main NodeContainer : Chunk Loop Start 0:2:42:7 has new state: QUEUED 2011-08-11 08:23:50,579 DEBUG KNIME-Workflow-Notifier KnimeResourceNavigator : ROOT's workflow has changed WORKFLOW_DIRTY 2011-08-11 08:23:50,595 DEBUG KNIME-Workflow-Notifier WorkflowEditor : Workflow event triggered: WorkflowEvent [type=WORKFLOW_DIRTY;node=0:2;old=null;new=null;timestamp=Aug 11, 2011 8:23:50 AM] 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Setting dirty flag on Substructure Matcher 0:2:42:44 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Substructure Matcher 0:2:42:44 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Setting dirty flag on Substructure Matcher 0:2:42:38 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Substructure Matcher 0:2:42:38 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Setting dirty flag on Substructure Matcher 0:2:42:35 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Substructure Matcher 0:2:42:35 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Setting dirty flag on Substructure Matcher 0:2:42:33 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Substructure Matcher 0:2:42:33 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Setting dirty flag on Substructure Matcher 0:2:42:41 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Substructure Matcher 0:2:42:41 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,595 DEBUG KNIME-Workflow-Notifier WorkflowRootEditPart : WorkflowRoot: workflow changed, refreshing children/connections.. 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Setting dirty flag on Concatenate (Optional in) 0:2:42:46 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Concatenate (Optional in) 0:2:42:46 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Setting dirty flag on Concatenate 0:2:42:47 2011-08-11 08:23:50,595 DEBUG KNIME-Workflow-Notifier KnimeResourceNavigator : ROOT's workflow has changed WORKFLOW_DIRTY 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Concatenate 0:2:42:47 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Setting dirty flag on Loop End 0:2:42:45 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Loop End 0:2:42:45 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,595 DEBUG main KnimeResourceNavigator : state changed to EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Setting dirty flag on JPython Function 0:2:11 2011-08-11 08:23:50,595 DEBUG main NodeContainer : JPython Function 0:2:11 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Setting dirty flag on Joiner 0:2:12 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Joiner 0:2:12 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Setting dirty flag on GroupBy 0:2:27 2011-08-11 08:23:50,595 DEBUG main NodeContainer : GroupBy 0:2:27 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Setting dirty flag on Rename 0:2:13 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Rename 0:2:13 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Setting dirty flag on Interactive Table 0:2:28 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Interactive Table 0:2:28 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,595 DEBUG main KnimeResourceNavigator : state changed to EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Workflow Manager 0 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Setting dirty flag on Database Reader 0:2:25 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Database Reader 0:2:25 has new state: UNCONFIGURED_MARKEDFOREXEC 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Database Reader 0:2:25 has new state: IDLE 2011-08-11 08:23:50,595 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,595 DEBUG main NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : Parallelise input 0:2:40 has new state: EXECUTED 2011-08-11 08:23:50,611 DEBUG main NodeContainer : Parallelise input 0:2:40 has new state: EXECUTED 2011-08-11 08:23:50,611 DEBUG main NodeContainer : Parallelise input 0:2:40 has new state: EXECUTED 2011-08-11 08:23:50,611 DEBUG main NodeContainer : Parallelise input 0:2:40 has new state: EXECUTED 2011-08-11 08:23:50,611 DEBUG main NodeContainer : Parallelise input 0:2:40 has new state: EXECUTED 2011-08-11 08:23:50,611 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : Setting dirty flag on Column Filter 0:2:14 2011-08-11 08:23:50,611 DEBUG main NodeContainer : Column Filter 0:2:14 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,611 DEBUG main NodeContainer : Setting dirty flag on CSV Writer 0:2:26 2011-08-11 08:23:50,611 DEBUG main NodeContainer : CSV Writer 0:2:26 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,611 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : Setting dirty flag on SDF Reader (deprecated) 0:2:21 2011-08-11 08:23:50,611 DEBUG main NodeContainer : SDF Reader (deprecated) 0:2:21 has new state: UNCONFIGURED_MARKEDFOREXEC 2011-08-11 08:23:50,611 DEBUG main NodeContainer : SDF Reader (deprecated) 0:2:21 has new state: IDLE 2011-08-11 08:23:50,611 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : Setting dirty flag on Reference Row Filter 0:2:29 2011-08-11 08:23:50,611 DEBUG main NodeContainer : Reference Row Filter 0:2:29 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,611 DEBUG main NodeContainer : Setting dirty flag on Column Filter 0:2:30 2011-08-11 08:23:50,611 DEBUG main NodeContainer : Column Filter 0:2:30 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,611 DEBUG main NodeContainer : Setting dirty flag on CSV Writer 0:2:31 2011-08-11 08:23:50,611 DEBUG main NodeContainer : CSV Writer 0:2:31 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,611 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG main NodeContainer : Workflow Manager 0 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG KNIME-Worker-0 WorkflowManager : Chunk Loop Start 0:2:42:7 doBeforePreExecution 2011-08-11 08:23:50,611 DEBUG KNIME-Worker-0 NodeContainer : Chunk Loop Start 0:2:42:7 has new state: PREEXECUTE 2011-08-11 08:23:50,611 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG KNIME-Worker-0 WorkflowManager : Chunk Loop Start 0:2:42:7 doBeforeExecution 2011-08-11 08:23:50,611 DEBUG KNIME-Worker-0 NodeContainer : Chunk Loop Start 0:2:42:7 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,611 DEBUG KNIME-Worker-0 LocalNodeExecutionJob : Chunk Loop Start 0:2:42:7 Start execute 2011-08-11 08:23:50,626 DEBUG KNIME-Worker-0 Buffer : Opening input stream on file "C:\Users\J53BA~1.DAV\AppData\Local\Temp\knime_container_20110811_326683653488379613.bin.gz", 1 open streams 2011-08-11 08:23:50,673 INFO KNIME-Worker-0 LocalNodeExecutionJob : Chunk Loop Start 0:2:42:7 End execute (0 secs) 2011-08-11 08:23:50,673 DEBUG KNIME-Worker-0 WorkflowManager : Chunk Loop Start 0:2:42:7 doBeforePostExecution 2011-08-11 08:23:50,673 DEBUG KNIME-Worker-0 NodeContainer : Chunk Loop Start 0:2:42:7 has new state: POSTEXECUTE 2011-08-11 08:23:50,673 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,673 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,673 DEBUG KNIME-Worker-0 WorkflowManager : Chunk Loop Start 0:2:42:7 doAfterExecute - success 2011-08-11 08:23:50,673 DEBUG KNIME-Worker-0 NodeContainer : Chunk Loop Start 0:2:42:7 has new state: EXECUTED 2011-08-11 08:23:50,673 DEBUG KNIME-Worker-0 Substructure Matcher : Configure succeeded. (Substructure Matcher) 2011-08-11 08:23:50,673 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:44 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,673 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:44 has new state: QUEUED 2011-08-11 08:23:50,673 DEBUG KNIME-Worker-0 Substructure Matcher : Configure succeeded. (Substructure Matcher) 2011-08-11 08:23:50,673 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:41 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,673 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:41 has new state: QUEUED 2011-08-11 08:23:50,673 DEBUG KNIME-Worker-0 Substructure Matcher : Configure succeeded. (Substructure Matcher) 2011-08-11 08:23:50,673 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:35 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,673 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:35 has new state: QUEUED 2011-08-11 08:23:50,673 ERROR KNIME-Worker-0 NodeContainer : Failed to submit job to job executor "Threaded Job Manager": unable to create new native thread 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Failed to submit job to job executor "Threaded Job Manager": unable to create new native thread java.lang.OutOfMemoryError: unable to create new native thread at java.lang.Thread.start0(Native Method) at java.lang.Thread.start(Unknown Source) at org.knime.core.util.ThreadPool.wakeupWorker(ThreadPool.java:524) at org.knime.core.util.ThreadPool.enqueue(ThreadPool.java:443) at org.knime.core.node.exec.ThreadNodeExecutionJobManager.submitJob(ThreadNodeExecutionJobManager.java:108) at org.knime.core.node.workflow.NodeContainer.queue(NodeContainer.java:357) at org.knime.core.node.workflow.WorkflowManager.queueIfQueuable(WorkflowManager.java:1850) at org.knime.core.node.workflow.WorkflowManager.configureSingleNodeContainer(WorkflowManager.java:4281) at org.knime.core.node.workflow.WorkflowManager.configureNodeAndPortSuccessors(WorkflowManager.java:4428) at org.knime.core.node.workflow.WorkflowManager.configureNodeAndSuccessors(WorkflowManager.java:4371) at org.knime.core.node.workflow.WorkflowManager.doAfterExecution(WorkflowManager.java:2105) at org.knime.core.node.workflow.NodeContainer.notifyParentExecuteFinished(NodeContainer.java:527) at org.knime.core.node.workflow.NodeExecutionJob.run(NodeExecutionJob.java:191) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at org.knime.core.util.ThreadPool$MyFuture.run(ThreadPool.java:124) at org.knime.core.util.ThreadPool$Worker.run(ThreadPool.java:239) 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 WorkflowManager : Substructure Matcher 0:2:42:35 doBeforePreExecution 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:35 has new state: PREEXECUTE 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 KnimeResourceNavigator : Node message changed: ERROR: Error in sub flow. 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 WorkflowManager : Substructure Matcher 0:2:42:35 doBeforeExecution 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:35 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 WorkflowManager : Substructure Matcher 0:2:42:35 doBeforePostExecution 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:35 has new state: POSTEXECUTE 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 WorkflowManager : Substructure Matcher 0:2:42:35 doAfterExecute - failure 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Concatenate (Optional in) 0:2:42:46 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Concatenate 0:2:42:47 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Loop End 0:2:42:45 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : JPython Function 0:2:11 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Joiner 0:2:12 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : GroupBy 0:2:27 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Rename 0:2:13 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Interactive Table 0:2:28 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Column Filter 0:2:14 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : CSV Writer 0:2:26 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Reference Row Filter 0:2:29 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Column Filter 0:2:30 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : CSV Writer 0:2:31 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 Substructure Matcher : reset 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 Substructure Matcher : clean output ports. 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:35 has new state: IDLE 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 Substructure Matcher : Configure succeeded. (Substructure Matcher) 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:35 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 Concatenate (Optional in) : Configure succeeded. (Concatenate (Optional in)) 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Concatenate (Optional in) 0:2:42:46 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 Concatenate : Configure succeeded. (Concatenate) 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Concatenate 0:2:42:47 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 Loop End : Configure succeeded. (Loop End) 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Loop End 0:2:42:45 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 Substructure Matcher : Configure succeeded. (Substructure Matcher) 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:33 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:33 has new state: QUEUED 2011-08-11 08:23:50,689 ERROR KNIME-Worker-0 NodeContainer : Failed to submit job to job executor "Threaded Job Manager": unable to create new native thread 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Failed to submit job to job executor "Threaded Job Manager": unable to create new native thread java.lang.OutOfMemoryError: unable to create new native thread at java.lang.Thread.start0(Native Method) at java.lang.Thread.start(Unknown Source) at org.knime.core.util.ThreadPool.wakeupWorker(ThreadPool.java:524) at org.knime.core.util.ThreadPool.enqueue(ThreadPool.java:443) at org.knime.core.node.exec.ThreadNodeExecutionJobManager.submitJob(ThreadNodeExecutionJobManager.java:108) at org.knime.core.node.workflow.NodeContainer.queue(NodeContainer.java:357) at org.knime.core.node.workflow.WorkflowManager.queueIfQueuable(WorkflowManager.java:1850) at org.knime.core.node.workflow.WorkflowManager.configureSingleNodeContainer(WorkflowManager.java:4281) at org.knime.core.node.workflow.WorkflowManager.configureNodeAndPortSuccessors(WorkflowManager.java:4428) at org.knime.core.node.workflow.WorkflowManager.configureNodeAndSuccessors(WorkflowManager.java:4371) at org.knime.core.node.workflow.WorkflowManager.doAfterExecution(WorkflowManager.java:2105) at org.knime.core.node.workflow.NodeContainer.notifyParentExecuteFinished(NodeContainer.java:527) at org.knime.core.node.workflow.NodeExecutionJob.run(NodeExecutionJob.java:191) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at org.knime.core.util.ThreadPool$MyFuture.run(ThreadPool.java:124) at org.knime.core.util.ThreadPool$Worker.run(ThreadPool.java:239) 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 WorkflowManager : Substructure Matcher 0:2:42:33 doBeforePreExecution 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:33 has new state: PREEXECUTE 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 WorkflowManager : Substructure Matcher 0:2:42:33 doBeforeExecution 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:33 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 WorkflowManager : Substructure Matcher 0:2:42:33 doBeforePostExecution 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:33 has new state: POSTEXECUTE 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 WorkflowManager : Substructure Matcher 0:2:42:33 doAfterExecute - failure 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 Substructure Matcher : reset 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 Substructure Matcher : clean output ports. 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:33 has new state: IDLE 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 Substructure Matcher : Configure succeeded. (Substructure Matcher) 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:33 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 Concatenate (Optional in) : Configure succeeded. (Concatenate (Optional in)) 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Concatenate (Optional in) 0:2:42:46 has new state: CONFIGURED 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 Substructure Matcher : Configure succeeded. (Substructure Matcher) 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:38 has new state: MARKEDFOREXEC 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:38 has new state: QUEUED 2011-08-11 08:23:50,689 ERROR KNIME-Worker-0 NodeContainer : Failed to submit job to job executor "Threaded Job Manager": unable to create new native thread 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Failed to submit job to job executor "Threaded Job Manager": unable to create new native thread java.lang.OutOfMemoryError: unable to create new native thread at java.lang.Thread.start0(Native Method) at java.lang.Thread.start(Unknown Source) at org.knime.core.util.ThreadPool.wakeupWorker(ThreadPool.java:524) at org.knime.core.util.ThreadPool.enqueue(ThreadPool.java:443) at org.knime.core.node.exec.ThreadNodeExecutionJobManager.submitJob(ThreadNodeExecutionJobManager.java:108) at org.knime.core.node.workflow.NodeContainer.queue(NodeContainer.java:357) at org.knime.core.node.workflow.WorkflowManager.queueIfQueuable(WorkflowManager.java:1850) at org.knime.core.node.workflow.WorkflowManager.configureSingleNodeContainer(WorkflowManager.java:4281) at org.knime.core.node.workflow.WorkflowManager.configureNodeAndPortSuccessors(WorkflowManager.java:4428) at org.knime.core.node.workflow.WorkflowManager.configureNodeAndSuccessors(WorkflowManager.java:4371) at org.knime.core.node.workflow.WorkflowManager.doAfterExecution(WorkflowManager.java:2105) at org.knime.core.node.workflow.NodeContainer.notifyParentExecuteFinished(NodeContainer.java:527) at org.knime.core.node.workflow.NodeExecutionJob.run(NodeExecutionJob.java:191) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at org.knime.core.util.ThreadPool$MyFuture.run(ThreadPool.java:124) at org.knime.core.util.ThreadPool$Worker.run(ThreadPool.java:239) 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 WorkflowManager : Substructure Matcher 0:2:42:38 doBeforePreExecution 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:38 has new state: PREEXECUTE 2011-08-11 08:23:50,689 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 WorkflowManager : Substructure Matcher 0:2:42:38 doBeforeExecution 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:38 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 WorkflowManager : Substructure Matcher 0:2:42:38 doBeforePostExecution 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:38 has new state: POSTEXECUTE 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 WorkflowManager : Substructure Matcher 0:2:42:38 doAfterExecute - failure 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 Substructure Matcher : reset 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 Substructure Matcher : clean output ports. 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:38 has new state: IDLE 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 Substructure Matcher : Configure succeeded. (Substructure Matcher) 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : Substructure Matcher 0:2:42:38 has new state: CONFIGURED 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 Concatenate (Optional in) : Configure succeeded. (Concatenate (Optional in)) 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : Concatenate (Optional in) 0:2:42:46 has new state: CONFIGURED 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 Concatenate (Optional in) : Configure succeeded. (Concatenate (Optional in)) 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : Concatenate (Optional in) 0:2:42:46 has new state: CONFIGURED 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 Concatenate : Configure succeeded. (Concatenate) 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : Concatenate 0:2:42:47 has new state: CONFIGURED 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-0 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 WorkflowManager : Substructure Matcher 0:2:42:41 doBeforePreExecution 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 NodeContainer : Substructure Matcher 0:2:42:41 has new state: PREEXECUTE 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 WorkflowManager : Substructure Matcher 0:2:42:41 doBeforeExecution 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 NodeContainer : Substructure Matcher 0:2:42:41 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 LocalNodeExecutionJob : Substructure Matcher 0:2:42:41 Start execute 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 WorkflowManager : Substructure Matcher 0:2:42:44 doBeforePreExecution 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 NodeContainer : Substructure Matcher 0:2:42:44 has new state: PREEXECUTE 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 WorkflowManager : Substructure Matcher 0:2:42:44 doBeforeExecution 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 NodeContainer : Substructure Matcher 0:2:42:44 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 Substructure Matcher : reset 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 Substructure Matcher : clean output ports. 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 LocalNodeExecutionJob : Substructure Matcher 0:2:42:44 Start execute 2011-08-11 08:23:50,704 ERROR KNIME-Worker-2 Substructure Matcher : Execute failed: unable to create new native thread 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 Substructure Matcher : reset 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 Substructure Matcher : Execute failed: unable to create new native thread java.lang.OutOfMemoryError: unable to create new native thread at java.lang.Thread.start0(Native Method) at java.lang.Thread.start(Unknown Source) at java.util.concurrent.ThreadPoolExecutor.addIfUnderMaximumPoolSize(Unknown Source) at java.util.concurrent.ThreadPoolExecutor.execute(Unknown Source) at java.util.concurrent.AbstractExecutorService.submit(Unknown Source) at org.knime.core.data.container.DataContainer.(DataContainer.java:375) at org.knime.core.node.BufferedDataContainer.(BufferedDataContainer.java:141) at org.knime.core.node.ExecutionContext.createDataContainer(ExecutionContext.java:310) at org.knime.core.node.ExecutionContext.createDataContainer(ExecutionContext.java:278) at org.knime.core.node.ExecutionContext.createDataContainer(ExecutionContext.java:257) at com.ggasoftware.indigo.knime.submatcher.IndigoSubstructureMatcherNodeModel.execute(IndigoSubstructureMatcherNodeModel.java:84) at org.knime.core.node.NodeModel.execute(NodeModel.java:668) at org.knime.core.node.NodeModel.executeModel(NodeModel.java:524) at org.knime.core.node.Node.execute(Node.java:873) at org.knime.core.node.workflow.SingleNodeContainer.performExecuteNode(SingleNodeContainer.java:840) at org.knime.core.node.exec.LocalNodeExecutionJob.mainExecute(LocalNodeExecutionJob.java:100) at org.knime.core.node.workflow.NodeExecutionJob.run(NodeExecutionJob.java:166) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at org.knime.core.util.ThreadPool$MyFuture.run(ThreadPool.java:124) at org.knime.core.util.ThreadPool$Worker.run(ThreadPool.java:239) 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 WorkflowManager : Substructure Matcher 0:2:42:41 doBeforePostExecution 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 NodeContainer : Substructure Matcher 0:2:42:41 has new state: POSTEXECUTE 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 WorkflowManager : Substructure Matcher 0:2:42:41 doAfterExecute - failure 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 Substructure Matcher : reset 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 Substructure Matcher : clean output ports. 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 NodeContainer : Substructure Matcher 0:2:42:41 has new state: IDLE 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 Substructure Matcher : clean output ports. 2011-08-11 08:23:50,704 ERROR KNIME-Worker-1 Substructure Matcher : Execute failed: unable to create new native thread 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 Substructure Matcher : Configure succeeded. (Substructure Matcher) 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 NodeContainer : Substructure Matcher 0:2:42:41 has new state: CONFIGURED 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 Substructure Matcher : Execute failed: unable to create new native thread java.lang.OutOfMemoryError: unable to create new native thread at java.lang.Thread.start0(Native Method) at java.lang.Thread.start(Unknown Source) at java.util.concurrent.ThreadPoolExecutor.addIfUnderMaximumPoolSize(Unknown Source) at java.util.concurrent.ThreadPoolExecutor.execute(Unknown Source) at java.util.concurrent.AbstractExecutorService.submit(Unknown Source) at org.knime.core.data.container.DataContainer.(DataContainer.java:375) at org.knime.core.node.BufferedDataContainer.(BufferedDataContainer.java:141) at org.knime.core.node.ExecutionContext.createDataContainer(ExecutionContext.java:310) at org.knime.core.node.ExecutionContext.createDataContainer(ExecutionContext.java:278) at org.knime.core.node.ExecutionContext.createDataContainer(ExecutionContext.java:257) at com.ggasoftware.indigo.knime.submatcher.IndigoSubstructureMatcherNodeModel.execute(IndigoSubstructureMatcherNodeModel.java:82) at org.knime.core.node.NodeModel.execute(NodeModel.java:668) at org.knime.core.node.NodeModel.executeModel(NodeModel.java:524) at org.knime.core.node.Node.execute(Node.java:873) at org.knime.core.node.workflow.SingleNodeContainer.performExecuteNode(SingleNodeContainer.java:840) at org.knime.core.node.exec.LocalNodeExecutionJob.mainExecute(LocalNodeExecutionJob.java:100) at org.knime.core.node.workflow.NodeExecutionJob.run(NodeExecutionJob.java:166) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at org.knime.core.util.ThreadPool$MyFuture.run(ThreadPool.java:124) at org.knime.core.util.ThreadPool$Worker.run(ThreadPool.java:239) 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 Concatenate (Optional in) : Configure succeeded. (Concatenate (Optional in)) 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 NodeContainer : Concatenate (Optional in) 0:2:42:46 has new state: CONFIGURED 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-2 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 WorkflowManager : Substructure Matcher 0:2:42:44 doBeforePostExecution 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 NodeContainer : Substructure Matcher 0:2:42:44 has new state: POSTEXECUTE 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 NodeContainer : Substructure match loops 0:2:42 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: EXECUTING 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 WorkflowManager : Substructure Matcher 0:2:42:44 doAfterExecute - failure 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 Substructure Matcher : reset 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 Substructure Matcher : clean output ports. 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 NodeContainer : Substructure Matcher 0:2:42:44 has new state: IDLE 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 Substructure Matcher : Configure succeeded. (Substructure Matcher) 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 NodeContainer : Substructure Matcher 0:2:42:44 has new state: CONFIGURED 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 Concatenate : Configure succeeded. (Concatenate) 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 NodeContainer : Concatenate 0:2:42:47 has new state: CONFIGURED 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 KnimeResourceNavigator : state changed to CONFIGURED 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 NodeContainer : Substructure match loops 0:2:42 has new state: CONFIGURED 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 KnimeResourceNavigator : state changed to IDLE 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 NodeContainer : PAINS-Indigo-parallel 0:2 has new state: IDLE 2011-08-11 08:23:50,704 ERROR KNIME-Worker-1 LocalNodeExecutionJob : Caught "OutOfMemoryError": unable to create new native thread 2011-08-11 08:23:50,704 DEBUG KNIME-Worker-1 LocalNodeExecutionJob : Caught "OutOfMemoryError": unable to create new native thread java.lang.OutOfMemoryError: unable to create new native thread at java.lang.Thread.start0(Native Method) at java.lang.Thread.start(Unknown Source) at java.util.concurrent.ThreadPoolExecutor.addIfUnderCorePoolSize(Unknown Source) at java.util.concurrent.ThreadPoolExecutor.execute(Unknown Source) at org.knime.core.node.workflow.WorkflowManager.checkForNodeStateChanges(WorkflowManager.java:4032) at org.knime.core.node.workflow.WorkflowManager.checkForNodeStateChanges(WorkflowManager.java:4024) at org.knime.core.node.workflow.WorkflowManager.configureNodeAndPortSuccessors(WorkflowManager.java:4440) at org.knime.core.node.workflow.WorkflowManager.configureNodeAndSuccessors(WorkflowManager.java:4371) at org.knime.core.node.workflow.WorkflowManager.doAfterExecution(WorkflowManager.java:2105) at org.knime.core.node.workflow.NodeContainer.notifyParentExecuteFinished(NodeContainer.java:527) at org.knime.core.node.workflow.NodeExecutionJob.run(NodeExecutionJob.java:191) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at org.knime.core.util.ThreadPool$MyFuture.run(ThreadPool.java:124) at org.knime.core.util.ThreadPool$Worker.run(ThreadPool.java:239)