Dear KNIME community,
While I managed to make a working workflow using Ilastik through KNIME on a 1 channel fluorescent dataset, I encounter some trouble on a dataset of RGB images.
The Ilastik project works fine on is own, but I have trouble once doing the integration in KNIME.
I wonder if Ilastik stand-alone (ISA) and Ilastik within KNIME (IWK) are reading the images in a different way.
I tried to convert RGB images to composite, some errors are gone but still IWK produce the error :
ERROR KNIPLogService File "C:\ilastik\ilastik-meta\lazyf=
low\lazyflow\operators\ioOperators\opTiffReader.py", line 88, in setupOutpu= ts
ERROR KNIPLogService assert P =3D=3D 1, "Don't know ho=
w to handle any number of planar samples per pixel except 1 (per page)"
ERROR KNIPLogService AssertionError: Don't know how to han=
dle any number of planar samples per pixel except 1 (per page) ERROR KNIPLogService
ERROR KNIPLogService ilastik error:
ERROR KNIPLogService The operation completed successfully.
Using this link you could download the projects, and the RGB and Composite = version of the images https://drive.switch.ch/index.php/s/uHraJwnCmFhzPTS
I'm looking forward to your answer,
We just pushed a new version of our ilastik integration to the KNIP nightly build. I will look at your issues in more depth on Monday and report my findings.
I downloaded the last version but still couldn't make it work.
Did you have more succes than me ?
I am sorry you are still having trouble with Ilastik. I will look into it a bit more the next few days.
Wish you, and the team, all the best for 2018 !
Did you manage to make any progress on this topic ?
Thanks again for your efforts,
I am sorry to inform you that we did not manage to make any good progress on improving the Ilastik integration. I hope I can work on it in the next months.